Running phase: unpackPhase
unpacking source archive /nix/store/bmahq40xnah8zjayq5zgr48hawkyqayx-ecopcr-ecopcr_v1.0.1.tar.gz
source root is ecopcr-ecopcr_v1.0.1
setting SOURCE_DATE_EPOCH to timestamp 1548166679 of file "ecopcr-ecopcr_v1.0.1/tools/ecoSort.py"
Running phase: patchPhase
Running phase: updateAutotoolsGnuConfigScriptsPhase
Running phase: configurePhase
no configure script, doing nothing
Running phase: buildPhase
build flags: SHELL=/nix/store/11ciq72n4fdv8rw6wgjgasfv4mjs1jrw-bash-5.2p37/bin/bash
gcc -M  -o ecopcr.d ecopcr.c
gcc -M  -o ecofind.d ecofind.c
gcc -M  -o ecoisundertaxon.d ecoisundertaxon.c
gcc -O3 -w -c -o ecopcr.o ecopcr.c
make -C libapat
make[1]: Entering directory '/build/ecopcr-ecopcr_v1.0.1/src/libapat'
gcc -M  -o apat_parse.d apat_parse.c
gcc -M  -o apat_search.d apat_search.c
gcc -M  -o libstki.d libstki.c
gcc -O3 -w -c -o apat_parse.o apat_parse.c
gcc -O3 -w -c -o apat_search.o apat_search.c
gcc -O3 -w -c -o libstki.o libstki.c
ar -cr libapat.a apat_parse.o apat_search.o libstki.o
ranlib libapat.a
make[1]: Leaving directory '/build/ecopcr-ecopcr_v1.0.1/src/libapat'
make -C libecoPCR
make[1]: Entering directory '/build/ecopcr-ecopcr_v1.0.1/src/libecoPCR'
gcc -M  -o ecoapat.d ecoapat.c
gcc -M  -o ecodna.d ecodna.c
gcc -M  -o ecoError.d ecoError.c
gcc -M  -o ecoIOUtils.d ecoIOUtils.c
gcc -M  -o ecoMalloc.d ecoMalloc.c
gcc -M  -o ecorank.d ecorank.c
gcc -M  -o ecoseq.d ecoseq.c
gcc -M  -o ecotax.d ecotax.c
gcc -M  -o ecofilter.d ecofilter.c
gcc -M  -o econame.d econame.c
gcc -O3 -w -c -o ecoapat.o ecoapat.c
gcc -O3 -w -c -o ecodna.o ecodna.c
gcc -O3 -w -c -o ecoError.o ecoError.c
gcc -O3 -w -c -o ecoIOUtils.o ecoIOUtils.c
gcc -O3 -w -c -o ecoMalloc.o ecoMalloc.c
gcc -O3 -w -c -o ecorank.o ecorank.c
gcc -O3 -w -c -o ecoseq.o ecoseq.c
gcc -O3 -w -c -o ecotax.o ecotax.c
gcc -O3 -w -c -o ecofilter.o ecofilter.c
gcc -O3 -w -c -o econame.o econame.c
ar -cr libecoPCR.a ecoapat.o ecodna.o ecoError.o ecoIOUtils.o ecoMalloc.o ecorank.o ecoseq.o ecotax.o ecofilter.o econame.o
ranlib libecoPCR.a
make[1]: Leaving directory '/build/ecopcr-ecopcr_v1.0.1/src/libecoPCR'
make -C libthermo
make[1]: Entering directory '/build/ecopcr-ecopcr_v1.0.1/src/libthermo'
gcc -M  -o nnparams.d nnparams.c
gcc -O3 -w -c -o nnparams.o nnparams.c
ar -cr libthermo.a nnparams.o
ranlib libthermo.a
make[1]: Leaving directory '/build/ecopcr-ecopcr_v1.0.1/src/libthermo'
gcc  -o ecoPCR ecopcr.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm
gcc -O3 -w -c -o ecofind.o ecofind.c
gcc  -o ecofind ecofind.o -Llibapat -LlibecoPCR -Llibthermo -lecoPCR -lthermo -lapat -lz -lm
gcc -O3 -w -c -o ecogrep.o ecogrep.c
ecogrep.c: In function 'main':
ecogrep.c:317:29: error: implicit declaration of function 'isatty' [8;;https://gcc.gnu.org/onlinedocs/gcc-14.2.0/gcc/Warning-Options.html#index-Wimplicit-function-declaration-Wimplicit-function-declaration8;;]
  317 |                         if (isatty(fileno(stdin)) == 0)
      |                             ^~~~~~
make: *** [global.mk:10: ecogrep.o] Error 1